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Haplogroups in the YSTR Database

The YSTR.org database of European Y chromosome haplotypes includes a list of the 30 most common minimal haplotypes. These 30 haplotypes are listed below grouped together according to my best guess as to their YCC haplogroup classification. The haplotypes in each group have their marker alleles shown in red where they differ from those of the most common haplotype in that group.

The "Top 30" ranking and population for each haplotype were those found when the database contained 12387 samples. These 30 haplotypes account for about 20% of the samples in the database.


YCC Haplogroup R1b
Top 30 Population DYS19 DYS389i DYS389ii DYS390 DYS391 DYS392 DYS393 DYS385a DYS385b
#1 356 14 13 29 24 11 13 13 11 14
#2 175 14 13 29 23 11 13 13 11 14
#3 169 14 13 29 24 10 13 13 11 14
#9 86 14 14 30 24 11 13 13 11 14
#10 86 14 13 29 24 11 13 13 11 15
#11 80 14 13 29 25 11 13 13 11 14
#14 70 14 13 29 23 10 13 13 11 14
#17 55 14 13 30 24 11 13 13 11 14
#20 50 15 13 29 24 11 13 13 11 14
#21 48 14 13 29 24 11 13 13 11 13
#22 46 14 13 29 24 10 13 13 11 15
#27 37 14 13 29 24 11 13 13 12 14
#29 35 14 13 29 23 11 13 13 11 15
#30 35 14 14 30 23 11 13 13 11 14


YCC Haplogroup I1a
Top 30 Population DYS19 DYS389i DYS389ii DYS390 DYS391 DYS392 DYS393 DYS385a DYS385b
#4 121 14 12 28 22 10 11 13 13 14
#5 104 14 12 28 23 10 11 13 14 14
#12 73 14 12 28 23 10 11 13 13 14
#19 52 14 12 28 22 10 11 13 14 14
#26 35 14 12 28 23 10 11 13 14 15


YCC Haplogroup I1b
Haplotype #18 seems to be most common in the area around Croatia.
Top 30 Population DYS19 DYS389i DYS389ii DYS390 DYS391 DYS392 DYS393 DYS385a DYS385b
#18 52 16 13 31 24 11 11 13 14 15


YCC Haplogroup R1a1
Haplotypes #8 and #28 seem to be most common in the area around Poland.
Top 30 Population DYS19 DYS389i DYS389ii DYS390 DYS391 DYS392 DYS393 DYS385a DYS385b
#7 103 16 13 29 25 10 11 13 11 14
#8 87 17 13 30 25 10 11 13 10 14
#13 71 16 13 30 25 10 11 13 11 14
#16 64 16 13 30 25 11 11 13 11 14
#24 44 15 13 29 25 10 11 13 11 14
#25 44 15 13 30 25 11 11 13 11 14
#28 35 16 13 30 25 10 11 13 10 14


YCC Haplogroup N3
Haplotype #6 seems to be most common in Finland.
Top 30 Population DYS19 DYS389i DYS389ii DYS390 DYS391 DYS392 DYS393 DYS385a DYS385b
#6 104 14 14 30 24 11 14 14 11 13


YCC Haplogroup E3b1 (alpha cluster)
Haplotype #15 is the most common E3b haplotype seen in Europe. This seems to be the modal haplotype for the E-M78-alpha cluster referred to by Cruciani et al.
Top 30 Population DYS19 DYS389i DYS389ii DYS390 DYS391 DYS392 DYS393 DYS385a DYS385b
#15 66 13 13 30 24 10 11 13 16 18


YCC Haplogroup E3b2
Haplotype #23 is seen mostly in Spain. This seems to be the modal haplotype for E-M81 that Cruciani et al saw centered in northwest Africa (with some spreading up into Spain).
Top 30 Population DYS19 DYS389i DYS389ii DYS390 DYS391 DYS392 DYS393 DYS385a DYS385b
#23 44 13 14 30 24 9 11 13 13 14



A map of the distribution of haplogroups in Europe is given on the second page of Semino's 2000 paper "A Genetic Legacy of Homo Sapiens Sapiens in Extant Europeans: a Y Chromosome Perspective". Haplogroup R1b (HG1) is shown in green, R1a (HG3) is shown in purple, I is shown in blue, F,G, and J are shown in red, E3b (HG21) is shown in yellow, and haplogroup N3 (HG16) is shown in pink.


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