| Phenotypes | Genes/Regions | refSNP | Chr | Position | Alleles | deCODEme™ | 23andMe™ | SNPedia |
| (SNP tagged) | (SNP tagged) | |||||||
| SNPs are extracted from SNPedia and 23andMe's Gene Journal excerpts (as noted), while the remainder are introduced by the compiler from various scientific papers. | ||||||||
| Compiled by Ron Scott - updated 22 May 2008 | ||||||||
| Age-related Macular Degeneration | CFH | rs800292 | 1 | 194908856 | C/T | yes | yes | √ |
| rs3753394 | 1 | 194887540 | C/T | yes | yes | |||
| rs1329428 | 1 | 194969433 | A/G | yes | yes | |||
| rs1061147 | 1 | 194920947 | A/C | yes | - | |||
| rs1061170 | 1 | 194925860 | C/T | no | - | |||
| HTRA1 | rs11200638 | 10 | 124210534 | A/G | no | - | ||
| ARMS2 | rs10490924 | 10 | 124204438 | G/T | no | - | ||
| Alcoholism | OPRM1 | rs1799971 | 6 | 154402490 | A/G | yes | yes | √ |
| DRD2 | rs1076560 | 11 | 112788898 | A/C | yes | - | ||
| SLC6A3 | rs27072 | 5 | 1447522 | C/T | yes | yes | ||
| rs27048 | 5 | 1465645 | C/T | yes | ||||
| Alzheimer's Disease | APOE | rs429358 | 19 | 50103781 | C/T | no | - | √ |
| rs7412 | 19 | 50103919 | C/T | yes | - | |||
| APOC1 | rs4420638 | 19 | 50114786 | A/G | yes | - | ||
| PLAU | rs2227564 | 10 | 75343107 | C/T | yes | yes | ||
| rs2227562 | 10 | 75342967 | A/G | yes | - | |||
| EIF2AK2 | rs2254948 | 2 | 37229795 | C/T | no* | yes* | ||
| Asthma | GSTP1 | rs1695 | 11 | 67109265 | A/G | yes | - | √ |
| PLA2G7 | rs1805018 | 6 | 46787262 | C/T | yes | yes | ||
| rs1051931 | 6 | 46780902 | A/G | yes | yes | |||
| AAA1 | rs324981 | 7 | 34784638 | A/T | no* | - | ||
| Atrial Fibrillation | 4q25 region | rs10033464 | 4 | 111940210 | G/T | yes | yes | ? |
| 4q25 region | rs2200733 | 4 | 111929618 | C/T | yes | yes | ||
| 6q14-16 region | 6 | ? | - | |||||
| 10q22 region | 10 | ? | - | |||||
| Bipolar Disorder | CUTL2 | rs3847953 | 12 | 110249847 | A/G | yes | yes | √ |
| LOC642580 | rs933399 | 12 | 110291882 | A/G | yes | - | ||
| PALB2 | rs420259 | 16 | 23541527 | C/T | yes | yes | ||
| Bitter Taste Perception | TAS2R38 | rs713598 | 7 | 141319814 | C/G | no* | yes* | √ |
| rs1726866 | 7 | 141319174 | C/T | yes | yes | |||
| Breast Cancer | FGFR2 | rs1219648 | 10 | 123336180 | A/G | yes | yes | √ |
| 16q12 region | rs3803662 | 16 | 51143842 | C/T | yes | yes | ||
| BRCA1 | rs1799950 | 17 | 38500007 | A/G | yes | - | ||
| rs4986850 | 17 | 38498997 | A/G | yes | - | |||
| rs2227945 | 17 | 38497656 | A/G | yes | - | |||
| rs16942 | 17 | 38497526 | A/G | yes | yes* | |||
| rs1799966 | 17 | 38476620 | A/G | yes | yes* | |||
| BRCA2 | rs1799944 | 13 | 31809463 | A/G | yes | - | ||
| rs766173 | 13 | 31804480 | G/T | yes | - | |||
| rs144848 | 13 | 31804729 | G/T | yes | yes | |||
| rs4987117 | 13 | 31812236 | C/T | yes | yes | |||
| rs1799954 | 13 | 31812592 | C/T | yes | - | |||
| rs11571746 | 13 | 31843108 | C/T | yes | - | |||
| rs11571747 | 13 | 31843172 | A/C | no | - | |||
| rs4987047 | 13 | 31851529 | A/T | no | - | |||
| rs11571833 | 13 | 31870626 | A/T | no | - | |||
| rs1801426 | 13 | 31870884 | A/G | yes | - | |||
| Celiac Disease | MYO9B | rs2305764 | 19 | 17174833 | C/T | yes | - | √ |
| Colorectal Cancer | AURKA | rs2273535 | 20 | 54394948 | A/T | no | - | √ |
| 8q24 region | rs6983267 | 8 | 128482487 | G/T | yes | yes | ||
| Coronary Heart Disease (Myocardial Infarction, atherosclerosis, etc.) | 9p21 region | rs2383207 | 9 | 22105959 | A/G | yes | yes | √ |
| MTHFD1L | rs6922269 | 6 | 151294678 | A/G | yes | yes | ||
| KIF6 | rs20455 | 6 | 39433056 | C/T | yes | yes | ||
| MFHAS1 | rs3827812 | 8 | 8692308 | A/G | yes | - | ||
| MGC35395 | rs1045527 | 8 | 8927451 | A/G | yes | - | ||
| rs1045528 | 8 | 8927489 | C/T | yes | - | |||
| rs1045529 | 8 | 8927508 | C/T | yes | - | |||
| PINX1 | rs1549796 | 8 | 10729769 | A/G | no | - | ||
| rs1052523 | 8 | 10729652 | C/T | no | - | |||
| rs2271355 | 8 | 10729568 | A/G | yes | - | |||
| GATA4 | rs804280 | 8 | 11650107 | G/T | yes | yes | ||
| FDFT1 | rs1047643 | 8 | 11697771 | C/T | yes | - | ||
| rs11549147 | 8 | 11703746 | A/G | no | - | |||
| rs1616534 | 8 | 11703860 | C/T | yes | yes | |||
| rs8417 | 8 | 11704588 | C/T | yes | - | |||
| rs2294137 | 8 | 11725368 | C/T | yes | - | |||
| rs9205 | 8 | 11726528 | C/G | no* | - | |||
| CTSB | rs12338 | 8 | 11748297 | C/G | no | - | ||
| DLC1 | rs532841 | 8 | 13001846 | C/T | yes | - | ||
| MSR1 | rs3747531 | 8 | 16057019 | C/G | no | - | ||
| FGL1 | rs484373 | 8 | 17787300 | C/T | yes | yes | ||
| CDKN2A / CDKN2B | rs10116277 | 9 | 22071397 | G/T | yes | yes | ||
| CELSR2 / PSRC1 | rs599839 | 1 | 109623689 | A/G | yes | - | ||
| Crohn's Disease | NOD2(1) | rs2066844 | 16 | 49303427 | C/T | yes | yes | √ |
| NOD2(2) | rs2066845 | 16 | 49314041 | C/G | no | yes* | ||
| NOD3(3) | rs2066847 | 16 | 49321279-49321280 | -/C | no | yes* | ||
| ATG16L1 | rs2241880 | 2 | 233848107 | C/T | yes | yes | ||
| IL23R | rs11209026 | 1 | 67478546 | A/G | yes | yes | ||
| NKX2-3 | rs11190140 | 10 | 101281583 | C/T | yes | yes | ||
| 5p13 region | rs17234657 | 5 | 40437266 | G/T | yes | yes | ||
| PTPN2 | rs1893217 | 18 | 12799340 | C/T | yes | yes | ||
| Developmental Dyslexia | - | rs761100 | 6 | 24740621 | G/T | yes | yes | √ |
| TTRAP | rs3212236 | 6 | 24756434 | A/G | no | no | ||
| KIAA0319 | rs4504469 | 6 | 24696863 | C/T | yes | - | ||
| Earwax Type | ABCC11 | rs17822931 | 16 | 46815699 | C/T | yes | yes | √ |
| Exfoliation Glaucoma XFG | LOXL1 | rs1048661 | 15 | 72006599 | G/T | no | - | √ |
| rs3825942 | 15 | 72006635 | C/T | yes | - | |||
| Eye Color | OCA2 | rs7495174 | 15 | 26017833 | A/G | yes | yes | √ |
| HERC2 | rs12913832 | 15 | 26039213 | A/G | yes | yes | ||
| Lactose Intolerance | LCT | rs4988235 | 2 | 136325116 | C/T | yes | yes | √ |
| Multiple Sclerosis | HLA-DRB1 | rs3135388 | 6 | 32521029 | C/T | yes | yes | √ |
| IL7RA | rs6897932 | 5 | 35910332 | C/T | yes | yes | ||
| IL4 | rs2243250 | 5 | 132037053 | C/T | yes | - | ||
| Muscle Fiber and Sports | ACTN3 | rs1815739 | 11 | 66084671 | C/T | yes | yes | √ |
| Obesity | FTO | rs3751812 | 16 | 52375961 | G/T | yes | yes | √ |
| rs9939609 | 16 | 52378028 | A/T | no | - | |||
| Psoriasis | - | rs887466 | 6 | 31251490 | C/T | yes | - | ? |
| Prostate Cancer | 8q24(1) | rs1447295 | 8 | 128554220 | A/C | yes | yes | √ |
| 8q24(2) | rs6983267 | 8 | 128482487 | G/T | yes | yes | ||
| 8q24(3) | rs10505483 | 8 | 128194377 | A/G | yes | yes | ||
| TCF2 | rs4430796 | 17 | 33172153 | A/G | yes | yes | ||
| 17q24.3 | rs1859962 | 17 | 66620348 | G/T | yes | yes | ||
| 8q24 | rs16901979 | 8 | 128194098 | A/C | no | - | ||
| - | rs5945572 | X | 51246423 | A/G | yes | yes | ||
| - | rs721048 | 2 | 62985235 | A/G | yes | - | ||
| - | rs2710646 | 2 | 62988383 | A/C | yes | yes | ||
| Restless Legs Syndrome | BTBD9 | rs3923809 | 6 | 38548948 | A/G | yes | yes | √ |
| Rheumatoid Arthritis | PTPN22 | rs2476601 | 1 | 114179091 | A/G | yes | yes | √ |
| - | rs3761847 | 9 | 122730060 | A/G | yes | yes | ||
| Type-1 Diabetes | HLA region | rs3129934 | 6 | 32444165 | C/T | yes | yes | √ |
| CTLA4 | rs3087243 | 2 | 204447164 | A/G | no | yes* | ||
| rs11571316 | 2 | 204439334 | C/T | no | yes* | |||
| IFIH1 | rs1990760 | 2 | 162832297 | C/T | yes | yes | ||
| INS | rs3741208 | 11 | 2126350 | C/T | no | yes* | ||
| PTPN2 | rs1893217 | 18 | 12799340 | C/T | yes | yes | ||
| PTPN22 | rs2476601 | 1 | 114179091 | A/G | yes | yes | ||
| SH2B3 | rs3184504 | 12 | 110368991 | C/T | yes | yes | ||
| KIAA0350 | rs725613 | 16 | 11077184 | A/C | yes | yes | ||
| Type-2 Diabetes | TCF7L2 | rs7903146 | 10 | 114748339 | C/T | yes | yes | √ |
| rs7901695 | 10 | 114744078 | C/T | yes | yes | |||
| PPARG | rs1801282 | 3 | 12368125 | C/G | yes | yes | ||
| rs6802898 | 3 | 12366207 | C/T | yes | yes | |||
| rs2197423 | 3 | 12366583 | C/T | yes | yes | |||
| KCNJ11 | rs5219 | 11 | 17366148 | C/T | no | yes* | ||
| IGF2BP2 | rs4402960 | 3 | 186994381 | G/T | yes | yes | ||
| HHEX | rs1111875 | 10 | 94452862 | A/G | yes | yes | ||
| rs5015480 | 10 | 94455539 | C/T | yes | yes | |||
| CDKAL1 | rs4712523 | 6 | 20765543 | A/G | yes | yes | ||
| SLC30A8 | rs13266634 | 8 | 118253964 | C/T | yes | yes | ||
| Venous Thromboembolism | F5 | rs6025 | 1 | 167785673 | A/G | yes | yes | √ |
| F2 | i3002432 | 11 | 46707k | yes | ||||
| Notes: | ||||||||
| 1) no* = not included on current Illumina Human1m beadchip but was on a previous Human1 chip. | ||||||||
| 2) The minus sign "-" in the 23andMe column indicates that the SNP is not included in the HumanHap550v3 list but may be in the custom set. | ||||||||
| 3) yes = SNP mentioned in The Spittoon - 23andMe's blog (hyperlinked) | ||||||||
| 4) yes* = apparently included in the HumanHap550v3 custom SNP list (hyperlinked). | ||||||||